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Sourcecode: coils version File versions  Download package

ncoils.h

#include <stdio.h>
#include <stdlib.h>
#include <math.h>

#define AAs "A_CDEFGHI_KLMN_PQRST_VW_Y_"
#define PI  3.1415

/* Include file for Ncoils */

00010 struct hept_pref {
      float **m;        /* 20 x 7 amino acid heptad weights */
      float smallest;         /* Smallest of the above */
      int n;                  /* statistical fitting data (weighted) */
      struct fit_dat *f;
};

00017 struct fit_dat {
      int win;          /* Window length */
      float m_cc, sd_cc;      /* mean/sd for coiled-coils */
      float m_g,  sd_g; /* mean/sd for globular */
      float sc;         /* scaling factor */
      int w;                  /* 1= weighted, 0=un-weighted */
};


struct hept_pref *read_matrix(FILE *MAT);
void exit_error();
void pred_coils(char *seq,char *ident,char *title,struct hept_pref *h,int win,int which,
   int weighted,int fasta,float min_P, int *t, int *tc, int min_segs);

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